PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_69296_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 211aa    MW: 23553.8 Da    PI: 9.2876
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_69296_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.41.3e-2159108255
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                          +y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa+a+++a+k+++g
  cra_locus_69296_iso_2_len_631_ver_3  59 KYRGIRQRP-WGKWAAEIRDPQ----QgVRVWLGTFNTAEEAARAYDEAAKRIRG 108
                                          8********.**********94....25************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-4059122IPR001471AP2/ERF domain
PROSITE profilePS5103224.2559116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-3359117IPR001471AP2/ERF domain
CDDcd000181.88E-3559117No hitNo description
SuperFamilySSF541717.19E-2359116IPR016177DNA-binding domain
PfamPF008473.3E-1559108IPR001471AP2/ERF domain
PRINTSPR003674.4E-126071IPR001471AP2/ERF domain
PRINTSPR003674.4E-128298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
XGRGTPSLSF SFTPKKERKT IAKTVTSGGA DSAKHKQLQK DTSVKVEKES SGARPRKNKY  60
RGIRQRPWGK WAAEIRDPQQ GVRVWLGTFN TAEEAARAYD EAAKRIRGDK AKLNFPNPPS  120
PPAKRQCTTT LPDLPALLES SNIVSDNPSL MNFGYQNQAS YYPIEIPAAE ENHHDEYELK  180
EQISNLESFL ELEPDSSQFS GIVNSDPINI X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-2360116663ATERF1
2gcc_A2e-2360116663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581889.14e-93PREDICTED: ethylene-responsive transcription factor RAP2-3
SwissprotP427362e-40RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLE3VVR49e-98E3VVR4_PETHY; Ethylene-responsive-element-binding factor 5
STRINGPGSC0003DMT4000433116e-85(Solanum tuberosum)